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Item A Global Review of Catch Efficiencies of Towed Fishing Gears Targeting Scallops(Taylor & Francis, 2022-10-29) Delargy, Adam J.; Blackadder, Lynda; Bloor, Isobel; McMinn, Carrie; Rudders, David B.; Szostek, Claire L.; Dobby, Helen; Kangas, Mervi; Stewart, Bryce D.; Williams, James R.; Stokesbury, Kevin D.E.The catch efficiency of towed fishing gears is the fraction of the target species in the gear path that were caught and retained. Catch efficiency is fundamental for calculating population status required for establishing fisheries management reference points. Consequently, catch efficiency has been estimated for many commercially important scallop (Pectinid) fisheries. This article synthesizes and discusses estimates of catch efficiency of towed gears used to target scallops, the methods for estimating catch efficiency and the factors that influence these estimates. There exists considerable variation in catch efficiency estimates among studies (0.1 to 0.7), and it is important that this variation is accounted for during surveys and stock assessments to avoid erroneous advice and estimates. The high variation was driven by differences in experimental conditions, estimation methods and scallop behavior. Scallop size and substrate type were the two most common reporting categories discussed in the studies and consequently should be considered the two most important drivers of catch efficiency. Other important factors such as gear specifications, and scallop species were featured in some studies. This review will be highly useful for designing catch efficiency experiments, survey design and stock assessments by understanding, and accounting for, catch efficiency variation.Item A review of new and existing non-extractive techniques for monitoring marine protected areas(Frontiers Media, 2023-07-19) McGeady, Ryan; Runya, Robert M.; Dooley, James S. G.; Howe, John A.; Fox, Clive J.; Wheeler, Andrew J.; Summers, Gerard; Callaway, Alexander; Beck, Suzanne; Brown, Louise S.; Dooly, Gerard; McGonigle, ChrisOcean biodiversity loss is being driven by several anthropogenic threats and significant efforts are required to halt losses and promote healthy marine ecosystems. The establishment of a network of Marine Protected Areas (MPAs) can help restrict damaging activities and have been recognised as a potential solution to aid marine conservation. When managed correctly they can deliver both ecological and socio-economic benefits. In recent times, MPA designations have increased rapidly while many countries have set future MPA targets for the decades ahead. An integral element of MPA management is adequate monitoring that collects data to assess if conservation objectives are being achieved. Data acquired by monitoring can vary widely as can the techniques employed to collect such data. Ideally, non-destructive and non-invasive methods are preferred to prevent damage to habitats and species, though this may rule out a number of traditional extractive sampling approaches such as dredges and trawls. Moreover, advances in ocean observation technologies enable the collection of large amounts of data at high resolutions, while automated data processing is beginning to make analyses more logistically feasible and less time-consuming. Therefore, developments to existing marine monitoring techniques and new emerging technologies have led to a diverse array of options when choosing to implement an MPA monitoring programme. Here, we present a review of new and existing non-extractive techniques which can be applied to MPA monitoring. We summarise their capabilities, applications, advantages, limitations and possible future developments. The review is intended to aid MPA managers and researchers in determining the suitability of available monitoring techniques based on data requirements and site conditions.Item The accumulation of microplastic pollution in a commercially important fishing ground.(Nature Research, 2022-03-10) Cunningham, Eoghan M.; Ehlers, Sonja M.; Kiriakoulakis, Konstadinos; Schuchert, Pia; Jones, Nia H.; Kregting, Louise; Woodall, Lucy C.; Dick, Jaimie T.A.The Irish Sea is an important area for Norway Lobster Nephrops norvegicus fisheries, which are the most valuable fishing resource in the UK. Norway lobster are known to ingest microplastic pollution present in the sediment and have displayed reduced body mass when exposed to microplastic pollution. Here, we identified microplastic pollution in the Irish Sea fishing grounds through analysis of 24 sediment samples from four sites of differing proximity to the Western Irish Sea Gyre in both 2016 and 2019. We used µFTIR spectroscopy to identify seven polymer types, and a total of 77 microplastics consisting of fibres and fragments. The mean microplastics per gram of sediment ranged from 0.13 to 0.49 and 0 to 1.17 MP/g in 2016 and 2019, respectively. There were no differences in the microplastic counts across years, and there was no correlation of microplastic counts with proximity to the Western Irish Sea Gyre. Considering the consistently high microplastic abundance found in the Irish Sea, and the propensity of N. norvegicus to ingest and be negatively impacted by them, we suggest microplastic pollution levels in the Irish Sea may have adverse impacts on N. norvegicus and negative implications for fishery sustainability in the future.Item Achievable agricultural soil carbon sequestration across Europe from country-specific estimates(Wiley, 2021-09-20) Rodrigues, Leonor; Hardy, Brieuc; Huyghebeart, Bruno; Fohrafellner, Julia; Fornara, Dario; Barancikova, Gabriela; Barcena, Teresa G.; De Boever, Maarten; Di Bene, Claudia; Feiziene, Dalia; Kaetterer, Thomas; Laszlo, Peter; O'Sullivan, Lilian; Seitz, Daria; Leifeld, JensThe role of soils in the global carbon cycle and in reducing GHG emissions from agriculture has been increasingly acknowledged. The ‘4 per 1000’ (4p1000) initiative has become a prominent action plan for climate change mitigation and achieve food security through an annual increase in soil organic carbon (SOC) stocks by 0.4%, (i.e. 4‰ per year). However, the feasibility of the 4p1000 scenario and, more generally, the capacity of individual countries to implement soil carbon sequestration (SCS) measures remain highly uncertain. Here, we evaluated country-specific SCS potentials of agricultural land for 24 countries in Europe. Based on a detailed survey of available literature, we estimate that between 0.1% and 27% of the agricultural greenhouse gas (GHG) emissions can potentially be compensated by SCS annually within the next decades. Measures varied widely across countries, indicating differences in country-specific environmental conditions and agricultural practices. None of the countries' SCS potential reached the aspirational goal of the 4p1000 initiative, suggesting that in order to achieve this goal, a wider range of measures and implementation pathways need to be explored. Yet, SCS potentials exceeded those from previous pan-European modelling scenarios, underpinning the general need to include national/regional knowledge and expertise to improve estimates of SCS potentials. The complexity of the chosen SCS measurement approaches between countries ranked from tier 1 to tier 3 and included the effect of different controlling factors, suggesting that methodological improvements and standardization of SCS accounting are urgently required. Standardization should include the assessment of key controlling factors such as realistic areas, technical and practical feasibility, trade-offs with other GHG and climate change. Our analysis suggests that country-specific knowledge and SCS estimates together with improved data sharing and harmonization are crucial to better quantify the role of soils in offsetting anthropogenic GHG emissions at global level.Item Advancing fishery-independent stock assessments for the Norway lobster (Nephrops norvegicus) with new monitoring technologies(Frontiers Media, 2022-09-09) Aguzzi, Jacopo; Chatzievangelou, Damianos; Robinson, Nathan J.; Bahamon, Nixon; Berry, Alan; Carreras, Marc; Company, Joan Batista; Costa, Corrado; del Rio Fernandez, Joaquin; Falahzadeh, Ahmad; Fifas, Spyros; Flögel, Sascha; Grinyó, Jordi; Jónasson, Jonas Pall; Jonsson, Patrik; Lordan, Colm; Lundy, Mathieu; Marini, Simone; Martinelli, Michela; Masmitja, Ivan; Mirimin, Luca; Naseer, Atif; Navarro, Joan; Palomeras, Narcis; Picardi, Giacomo; Silva, Cristina; Stefanni, Sergio; Vigo, Maria; Vila, Yolanda; Weetman, Adrian; Doyle, Jennifer; Environmental ProtectionThe Norway lobster, Nephrops norvegicus, supports a key European fishery. Stock assessments for this species are mostly based on trawling and UnderWater TeleVision (UWTV) surveys. However, N. norvegicus are burrowing organisms and these survey methods are unable to sample or observe individuals in their burrows. To account for this, UWTV surveys generally assume that “1 burrow system = 1 animal”, due to the territorial behavior of N. norvegicus. Nevertheless, this assumption still requires in-situ validation. Here, we outline how to improve the accuracy of current stock assessments for N. norvegicus with novel ecological monitoring technologies, including: robotic fixed and mobile camera-platforms, telemetry, environmental DNA (eDNA), and Artificial Intelligence (AI). First, we outline the present status and threat for overexploitation in N. norvegicus stocks. Then, we discuss how the burrowing behavior of N. norvegicus biases current stock assessment methods. We propose that state-of-the-art stationary and mobile robotic platforms endowed with innovative sensors and complemented with AI tools could be used to count both animals and burrows systems in-situ, as well as to provide key insights into burrowing behavior. Next, we illustrate how multiparametric monitoring can be incorporated into assessments of physiology and burrowing behavior. Finally, we develop a flowchart for the appropriate treatment of multiparametric biological and environmental data required to improve current stock assessment methods.Item An individual based model of female brown crab movements in the western English channel: modelling migration behaviour(Cambridge University Press, 2023-10-25) Hart, Paul J.B.; Pearson, Emma; Hunter, Ewan; Fisheries and Aquatic EcosystemsAn individual based model (IBM) of the female brown crab Cancer pagurus population exploited off South Devon, UK is described. Size dependent movement rules are ascribed to individuals based on previous observations of predominantly westward migration down the English Channel. Two additional versions of the movement rules explored whether the empirically derived rule was necessary to model the temporal and spatial distribution of crabs. Local crab movement was dependent on substrate type and water depth. Females prefer a soft substrate in which they can bury when temperatures are low or they have eggs to incubate. Crabs have size dependent depth preferences with larger crabs preferring greater depths. Two recruitment functions are used which relate the number of incoming crabs to the sea surface temperature five years earlier. Model outputs were tested against 10 years of logbook data from three crab fishers and against data from a year-long sampling programme on eight of the vessels exploiting the area. The model reproduces the long-term pattern which is mostly temperature driven. Spatial variation in catch is captured effectively by the model with more crabs being caught in the east of the area than the west and more caught offshore than inshore. The significance of the results is discussed in relation to the crab life cycle, management of the fishery and the potential effects of increasing temperatures.Item Animal-vehicle collisions during the COVID-19 lockdown in early 2020 in the Krakow metropolitan region, Poland(Nature Research, 2022-05-09) Basak, Sayantani M.; O'Mahony, Declan; Lesiak, Maciej; Basak, Arpan Kumar; Ziolkowska, Elzbieta; Kaim, Dominik; Hossain, Md Sarwar; Wierzbowska, Izabela A.The interrelations between human activity and animal populations are of increasing interest due to the emergence of the novel COVID-19 and the consequent pandemic across the world. Anthropogenic impacts of the pandemic on animals in urban-suburban environments are largely unknown. In this study, the temporal and spatial patterns of urban animal response to the COVID-19 lockdown were assessed using animal-vehicle collisions (AVC) data. We collected AVC data over two 6-month periods in 2019 and 2020 (January to June) from the largest metropolis in southern Poland, which included lockdown months. Furthermore, we used traffic data to understand the impact of lockdown on AVC in the urban area. Our analysis of 1063 AVC incidents revealed that COVID-19 related lockdown decreased AVC rates in suburban areas. However, in the urban area, even though traffic volume had significantly reduced, AVC did not decrease significantly, suggesting that lockdown did not influence the collision rates in the urban area. Our results suggest that there is a need to focus on understanding the effects of changes in traffic volume on both human behaviour and wildlife space use on the resulting impacts on AVC in the urban area.Item Applying the nutrient transfer continuum framework to phosphorus and nitrogen losses from livestock farmyards to watercourses(Wiley, 2021-10-05) Vero, Sara E.; Doody, DonnachaFarmyards are commonly conceptualized as point sources of nutrient pollution nested within the wider agricultural landscape. However, within farmyards there are individual sources and delivery pathways, each of which is affected by a range of management practices and infrastructure. Rainfall mobilizes these nutrients, which may then be delivered to a receptor or to the wider drainage network. As such, the nutrient transfer continuum (NTC), which has been established as a framework to understand and mitigate nutrient loss at a landscape scale, can be similarly applied to disentangle the stages of nutrient transfer from farmyards. The NTC differentiates nutrient transfer into source, mobilization, delivery, and impact stages. This differentiation allows targeting of mitigation measures and evaluation of costs and benefits. This review paper applies the NTC template to farmyard nitrogen and phosphorus transport to conceptualize causative factors and to identify mitigation options.Item Approaches to herbicide (MCPA) pollution mitigation in drinking water source catchments using enhanced space and time monitoring(Elsevier, 2020-10-08) Morton, Phoebe; Cassidy, Rachel; Floyd, Stewart D.; Doody, Donnacha; McRoberts, W. Colin; Jordan, PhilipFreshwater occurrences of the selective acid herbicide 2-methyl-4-chloro-phenoxyacetic acid (MCPA) are an ongoing regulatory and financial issue for water utility industries as the number and magnitude of detections increase, particularly in surface water catchments. Assessments for mitigating pesticide pollution in catchments used as drinking water sources require a combination of catchment-based and water treatment solutions, but approaches are limited by a lack of empirical data. In this study, an enhanced spatial (11 locations) and temporal (7-hourly to daily sampling) monitoring approach was employed to address these issues in an exemplar surface water source catchment (384 km2). The spatial sampling revealed that MCPA was widespread, with occurrences above the 0.1 μg L−1 threshold for a single pesticide being highly positively correlated to sub-catchments with higher proportions of ‘Improved Grassland’ land use (r = 0.84). These data provide a strong foundation for targeting catchment-based mitigation solutions and also add to the debate on the ecosystems services provided by such catchments. Additionally, of the 999 temporal samples taken over 12 months from the catchment outlet, 25% were above the drinking water threshold of 0.1 μg L−1. This prevalence of high concentrations presents costly problems for source water treatment. Using these data, abstraction shutdowns were simulated for five scenarios using hydrometeorological data to explore the potential to avoid intake of high MCPA concentrations. The scenarios stopped abstraction for 4.2–9.3% of the April–October period and reduced intake of water containing over 0.1 μg L−1 of MCPA by 16–31%. This represents an important development for real-time proxy assessments for water abstraction in the absence of more direct pesticide monitoring data.Item Assessments of Composite and Discrete Sampling Approaches for Water Quality Monitoring(Springer, 2018-04-12) Cassidy, Rachel; Jordan, Phil; Bechmann, Marianne; Kronvang, Brian; Kyllmar, Katarina; Shore, MaireadAchieving an operational compromise between spatial coverage and temporal resolution in national scale river water quality monitoring is a major challenge for regulatory authorities, particularly where chemical concentrations are hydrologically dependent. The efficacy of flow-weighted composite sampling (FWCS) approaches for total phosphorus (TP) sampling (n = 26–52 analysed samples per year), previously applied in monitoring programmes in Norway, Sweden and Denmark, and which account for low to high flow discharges, was assessed by repeated simulated sampling on high resolution TP data. These data were collected in three research catchments in Ireland over the period 2010–13 covering a base-flow index range of 0.38 to 0.69. Comparisons of load estimates were also made with discrete (set time interval) daily and sub-daily sampling approaches (n = 365 to >1200 analysed samples per year). For all years and all sites a proxy of the Norwegian sampling approach, which is based on re-forecasting discharge for each 2-week deployment, proved most stable (median TP load estimates of 87–98%). Danish and Swedish approaches, using long-term flow records to set a flow constant, were only slightly less effective (median load estimates of 64–102% and 80–96%, respectively). Though TP load estimates over repeated iterations were more accurate using the discrete approaches, particularly the 24/7 approach (one sample every 7 h in a 24 bottle sampler - median % load estimates of 93–100%), composite load estimates were more stable, due to the integration of multiple small samples (n = 100–588) over a deployment.Item At what scale should we assess the health of pelagic habitats? Trade-offs between small-scale manageable pressures and the need for regional upscaling(Elsevier, 2023-07-13) Graves, C.A.; Best, M.; Atkinson, A.; Bear, B.; Bresnan, E.; Holland, M.; Johns, D.G.; Machairopoulou, M.; McQuatters-Gollop, A.; Mellor, A.; Ostle, C; Paxman, K.; Pitois, S.; Tett, P.; Devlin, M.Major planktonic lifeforms such as diatoms, dinoflagellates, meroplankton and holoplankton have recently shown significant and alarming changes in abundance - mainly downwards trends - around the northwest European shelf. This has major implications for food web connections and for ecosystem services including seafood provision and carbon storage. We have quantified these changes in abundance for 2006–2019/20 using a Plankton Index (PI) and show that the scale of spatial aggregation is critical to the ability of the PI to detect change, understand causal mechanisms, and provide advice to policymakers. We derived PI statistics in the Celtic and North Seas from data from the Continuous Plankton Recorder survey offshore and England’s Environment Agency inshore using three sets of spatial units: (i) Ecohydrodynamic (EHD) units based on hydro-biogeochemical modelling, (ii) ‘COMP4′ areas based on cluster analysis of satellite data for chlorophyll a and primary productivity, and (iii) English coastal and estuarine Water Framework Directive (WFD) waterbodies. For the largest scale areas, the EHD units (median size 87,000 km2), we find greater change in plankton communities than previously reported, suggesting that these shifts have continued and possibly intensified in recent years. The smaller-scale COMP4 areas (median size 6,700 km2) appear to encompass more spatially coherent changes in plankton community structure than EHD units; at this scale PI values indicate community shifts of greater magnitude. These COMP4 areas provide a reasonable compromise scale for linking offshore plankton communities to large-scale drivers of change such as climate warming. For inshore plankton communities, larger changes are detected at the smaller WFD waterbody scale (median size 11 km2). This scale allows direct links to coastal management measures and is more suitable for linking to land-sourced pressures. Recent integration of the UK’s OSPAR and WFD plankton monitoring data management enables the exploration of changes across spatial scales to develop a holistic understanding of ecosystem health. Regional-sea scale derivation of the PI for coastal waters provides a clear indication that changes are occurring, at least in phytoplankton communities, while localised PI statistics offer an additional layer of information which can be an important tool for linking to localised drivers of change including coastal anthropogenic pressures. Broadscale inshore zooplankton monitoring is needed to evaluate the coastal plankton community holistically; zooplankton communities offshore are also changing but these changes cannot currently be linked to coastal processes. Layering information across spatial scales provides a breadth of system-level understanding beyond what any one typology can provide.Item Atlantic salmon smolts in the Irish Sea: First evidence of a northerly migration trajectory(Wiley, 2020-06-09) Barry, James; Kennedy, Richard; Rosell, Robert S.; Roche, William K.Results from an acoustic telemetry study revealed for the first time a northerly migration route for Atlantic salmon (Salmo salar L.) smolts leaving the east coast of Ireland. Atlantic salmon smolts were tagged in spring 2019 in the Castletown and Boyne rivers. Three tagged smolts registered on disparate deep‐water offshore marine receivers as they travelled northwards out of the Irish Sea through the North Channel. One fish had migrated an estimated 250 km in a period of 32 days. The remaining two individuals were detected on receivers located off the Northern Ireland coast, further corroborating the northward migration of salmon smolts through the Irish Sea.Item Barriers and opportunities of soil knowledge to address soil challenges: Stakeholders’ perspectives across Europe(Elsevier, 2022-10-31) Vanino, Silvia; Pirelli, Tiziana; Di Bene, Claudia; Bøe, Frederik; Castanheira, Nádia; Chenu, Claire; Cornu, Sophie; Feiza, Virginijus; Fornara, Dario; Heller, Olivier; Kasparinskis, Raimonds; Keesstra, Saskia; Lasorella, Maria Valentina; Madenoğlu, Sevinç; Meurer, Katharina H.E.; O'Sullivan, Lilian; Peter, Noemi; Piccini, Chiara; Siebielec, Grzegorz; Smreczak, Bozena; Thorsøe, Martin Hvarregaard; Farina, Roberta; Environmental ProtectionClimate-smart sustainable management of agricultural soil is critical to improve soil health, enhance food and water security, contribute to climate change mitigation and adaptation, biodiversity preservation, and improve human health and wellbeing. The European Joint Programme for Soil (EJP SOIL) started in 2020 with the aim to significantly improve soil management knowledge and create a sustainable and integrated European soil research system. EJP SOIL involves more than 350 scientists across 24 Countries and has been addressing multiple aspects associated with soil management across different European agroecosystems. This study summarizes the key findings of stakeholder consultations conducted at the national level across 20 countries with the aim to identify important barriers and challenges currently affecting soil knowledge but also assess opportunities to overcome these obstacles. Our findings demonstrate that there is significant room for improvement in terms of knowledge production, dissemination and adoption. Among the most important barriers identified by consulted stakeholders are technical, political, social and economic obstacles, which strongly limit the development and full exploitation of the outcomes of soil research. The main soil challenge across consulted member states remains to improve soil organic matter and peat soil conservation while soil water storage capacity is a key challenge in Southern Europe. Findings from this study clearly suggest that going forward climate-smart sustainable soil management will benefit from (1) increases in research funding, (2) the maintenance and valorisation of long-term (field) experiments, (3) the creation of knowledge sharing networks and interlinked national and European infrastructures, and (4) the development of regionally-tailored soil management strategies. All the above-mentioned interventions can contribute to the creation of healthy, resilient and sustainable soil ecosystems across Europe.Item Behavioural traits of rainbow trout and brown trout may help explain their differing invasion success and impacts(Nature Research (Springer), 2022-02-02) McGlade, Ciara L. O.; Dickey, James W. E.; Kennedy, Richard; Donnelly, Shannon; Nelson, Clare‑Ann; Dick, Jaimie T. A.; Arnott, GarethAnimal behaviour is increasingly recognised as critical to the prediction of non-native species success and impacts. Rainbow trout and brown trout have been introduced globally, but there appear to be differences in their patterns of invasiveness and ecological impact. Here, we investigated whether diploid rainbow trout and diploid and triploid brown trout differ among several key behavioural measures linked to invasiveness and impact. We assessed activity, boldness, aggression, and feeding, using open field, novel object, shelter, mirror, feeding, and functional response experiments. We also tested within each fish type for behavioural syndromes comprising correlations among activity, boldness and aggression. Rainbow trout were more active and aggressive but less bold than diploid and triploid brown trout. In small groups, however, rainbow trout were bolder than both types of brown trout. Diploid brown trout were more active and bolder than triploids when tested individually, and had a higher functional response than both rainbow trout and triploid brown trout. In terms of behavioural syndromes, there was no association between activity and boldness in rainbow trout, however, there was in both brown trout types. The increased activity and aggression of rainbow trout may reflect an increased stress response to novel situations, with this response reduced in a group. These results suggest that rainbow trout do not manage their energy budgets effectively, and may explain why they have limited survival as invaders. In addition, the lower functional response of rainbow trout may explain why they are implicated in fewer ecological impacts, and the triploidy treatment also appears to lower the potential impact of brown trout. Comparative analyses of multiple behaviours of invasive species and genetic variants may thus be key to understanding and predicting invader success and ecological impacts.Item Biological and synthetic surfactant exposure increases antimicrobial gene occurrence in a freshwater mixed microbial biofilm environment(2023-03-17) Gill, Stephanie P.; Snelling, William J.; Dooley, James S. G.; Ternan, Nigel G.; Banat, Ibrahim M.; Arnscheidt, Joerg; Hunter, BillyAquatic habitats are particularly susceptible to chemical pollution, such as antimicrobials, from domestic, agricultural, and industrial sources. This has led to the rapid increase of antimicrobial resistance (AMR) gene prevalence. Alternate approaches to counteract pathogenic bacteria are in development including synthetic and biological surfactants such as sodium dodecyl sulfate (SDS) and rhamnolipids. In the aquatic environment, these surfactants may be present as pollutants with the potential to affect biofilm formation and AMR gene occurrence. We tested the effects of rhamnolipid and SDS on aquatic biofilms in a freshwater stream in Northern Ireland. We grew biofilms on contaminant exposure substrates deployed within the stream over 4 weeks. We then extracted DNA and carried out shotgun sequencing using a MinION portable sequencer to determine microbial community composition, with 16S rRNA analyses (64,678 classifiable reads identified), and AMR gene occurrence (81 instances of AMR genes over 9 AMR gene classes) through a metagenomic analysis. There were no significant changes in community composition within all systems; however, biofilm exposed to rhamnolipid had a greater number of unique taxa as compared to SDS treatments and controls. AMR gene prevalence was higher in surfactant-treated biofilms, although not significant, with biofilm exposed to rhamnolipids having the highest presence of AMR genes and classes compared to the control or SDS treatments. Our results suggest that the presence of rhamnolipid encourages an increase in the prevalence of AMR genes in biofilms produced in mixed-use water bodies.Item Blooms also like it cold(Wiley, 2023-02-17) Reinl, Kaitlin L.; Harris, Ted D.; North, Rebecca L.; Almela, Pablo; Berger, Stella A.; Bizic, Mina; Burnet, Sarah H.; Grossart, Hans-Peter; Ibelings, Bastiaan W.; Jakobsson, Ellinor; Knoll, Lesley B.; Lafrancois, Brenda M.; McElarney, Yvonne; Morales-Williams, Ana M.; Obertegger, Ulrike; Ogashawara, Igor; Paule-Mercado, Ma. Cristina; Peierls, Benjamin L.; Rusak, James A.; Sarkar, Siddhartha; Sharma, Sapna; Trout-Haney, Jessica V.; Urrutia-Cordero, Pablo; Venkiteswaran, Jason J.; Wain, Danielle J.; Warner, Katelynn; Weyhenmeyer, Gesa A.; Yokota, KiyokoCyanobacterial blooms have substantial direct and indirect negative impacts on freshwater ecosystems including releasing toxins, blocking light needed by other organisms, and depleting oxygen. There is growing concern over the potential for climate change to promote cyanobacterial blooms, as the positive effects of increasing lake surface temperature on cyanobacterial growth are well documented in the literature; however, there is increasing evidence that cyanobacterial blooms are also being initiated and persisting in relatively cold-water temperatures (< 15°C), including ice-covered conditions. In this work, we provide evidence of freshwater cold-water cyanobacterial blooms, review abiotic drivers and physiological adaptations leading to these blooms, offer a typology of these lesser-studied cold-water cyanobacterial blooms, and discuss their occurrence under changing climate conditions.Item Bottom trawl fishing footprints on the world’s continental shelves(National Academy of Sciences, 2018-10-08) Amoroso, Ricardo O.; Pitcher, C. Roland; Rijnsdorp, Adriaan D.; McConnaughey, Robert A.; Parma, Ana M.; Suuronen, Petri; Eigaard, Ole R.; Bastardie, Francois; Hintzen, Niels T.; Althaus, Franziska; Baird, Susan Jane; Black, Jenny; Buhl-Mortensen, Lene; Campbell, Alexander B.; Catarino, Rui; Collie, Jeremy; Cowan Jr., James H.; Durholtz, Deon; Engstrom, Nadia; Fairweather, Tracey P.; Fock, Heino O.; Ford, Richard; Gálvez, Patricio A.; Gerritsen, Hans; Góngora, María Eva; González, Jessica A.; Hiddink, Jan G.; Hughes, Kathryn M.; Intelmann, Steven S.; Jenkins, Chris; Jonsson, Patrik; Kainge, Paulus; Kangas, Mervi; Kathena, Johannes N.; Kavadas, Stefanos; Leslie, Rob W.; Lewis, Steve G.; Lundy, Mathieu; Makin, David; Martin, Julie; Mazor, Tessa; Gonzalez-Mirelis, Genoveva; Newman, Stephen J.; Papadopoulou, Nadia; Posen, Paulette E.; Rochester, Wayne; Russo, Tommaso; Sala, Antonello; Semmens, Jayson M.; Silva, Cristina; Tsolos, Angelo; Vanelslander, Bart; Wakefield, Corey B.; Wood, Brent A.; Hilborn, Ray; Kaiser, Michel J.; Jennings, SimonBottom trawlers land around 19 million tons of fish and invertebrates annually, almost one-quarter of wild marine landings. The extent of bottom trawling footprint (seabed area trawled at least once in a specified region and time period) is often contested but poorly described. We quantify footprints using high-resolution satellite vessel monitoring system (VMS) and logbook data on 24 continental shelves and slopes to 1,000-m depth over at least 2 years. Trawling footprint varied markedly among regions: from <10% of seabed area in Australian and New Zealand waters, the Aleutian Islands, East Bering Sea, South Chile, and Gulf of Alaska to >50% in some European seas. Overall, 14% of the 7.8 million-km2 study area was trawled, and 86% was not trawled. Trawling activity was aggregated; the most intensively trawled areas accounting for 90% of activity comprised 77% of footprint on average. Regional swept area ratio (SAR; ratio of total swept area trawled annually to total area of region, a metric of trawling intensity) and footprint area were related, providing an approach to estimate regional trawling footprints when highresolution spatial data are unavailable. If SAR was ≤0.1, as in 8 of 24 regions, therewas >95% probability that >90%of seabed was not trawled. If SAR was 7.9, equal to the highest SAR recorded, there was >95% probability that >70% of seabed was trawled. Footprints were smaller and SAR was ≤0.25 in regions where fishing rates consistently met international sustainability benchmarks for fish stocks, implying collateral environmental benefits from sustainable fishing.Item Can carbon storage in West Antarctic fjords have an impact on climate change, following glacier retreat?(Wiley, 2021-12-19) Hunter, BillyZwerschke et al’s (2021) paper ‘Quantification of blue carbon pathways contributing to negative feedback on climate change following glacier retreat in West Antarctic fjords’ provides an interesting insight into the potential for Antarctic fjords to store carbon, following glacial retreat. The authors used ash free dry mass (AFDM) as a proxy for carbon content in the carbon content of sediments and microbenthic infauna within the fjords to estimate their carbon sequestration potential. This equates to between 0.05 and 0.19 % of the estimated carbon buried at the seafloor. Consequently, the paper’s assertion that these fjords could provide a negative feedback against climate change is tenuous when considered against the wider impacts of Antarctic deglaciation.Item A carrying capacity framework for soil phosphorus and hydrological sensitivity from farm to catchment scales(Elsevier, 2019-06-04) Cassidy, Rachel; Thomas, Ian A.; Higgins, Alex J.; Bailey, John S.; Jordan, PhilAgricultural fieldswith above optimumsoil phosphorus (P) are considered to pose risks to water quality and especially when those areas are coincident with hydrologically sensitive areas (HSAs) that focus surface runoff pathways. This is a challenge tomanage in areas of agricultural intensity in surfacewater dominated catchments where water quality targets have to be met. In this study, a soil P survey of 13 sub-catchments and 7693 fields was undertaken in a 220 km2 catchment. HSAs were also determined as the top 25th percentile risk froma runoff routingmodel that used a LiDAR digital elevation model and soil hydraulic conductivity properties. Distributions of these spatial data were compared with river soluble reactive phosphorus (SRP) concentration measured fortnightly over one year. The results showed that 41% of fields exceeded the agronomic optimumfor soil P across the sub-catchments.When compared with the available water quality data, the results indicated that the high soil P carrying capacity area of the sub-catchmentswas 15%. Combining high soil P and HSA, the carrying capacity area of the sub-catchmentswas 1.5%. The opportunities to redistribute these riskswere analysed on fields with below optimum soil P and where HSA risk was also minimal. These ranged from 0.4% to 13.8% of sub-catchment areas and this limited potential, unlikely to fully reduce the P pressure to over-supplied fields, would need to be considered alongside addressing this over-supply and also with targeted HSA interception measures.Item The changing times of Europe's largest remaining commercially harvested population of eel Anguilla anguilla L(Wiley, 2021-06-04) Aprahamian, Miran W.; Evans, Derek W.; Briand, Cedric; Walker, Alan M.; McElarney, Yvonne; Allen, Michelle M.This study quantifies the processes involved in regulating the European eel population of Lough Neagh, a lake in Northern Ireland. The relationship between glass eel input and silver eel output for the 1923–1997 cohorts was best described by a Beverton–Holt stock recruitment model. Glass eel input time series was not complete and was thus derived from the relationship between catches elsewhere in Europe and Lough Neagh, together with the addition of stocked glass eel. Silver eel output was the sum of silver eel escapement, catch and yellow eel catch converted to silver eel equivalents. Natural mortality increased with glass eel density, ranging from 0.017 to 0.142 year−1. The mean carrying capacity increased from ≈3.25 M silver eels (≈26 kg ha−1) for the 1923–1943 cohorts to ≈5.0 M (≈40 kg ha−1) for the 1948–1971 cohorts before regressing back to ≈3.25 M. The total silver eel output was highest during the late 1970s/early 1980s at 35–45 kg ha−1 year−1 and lowest during the early years of the 20th century and is currently at 10–15 kg ha−1 year−1. The findings are discussed in relation to (a) the ecological changes that have occurred within the lough, associated with eutrophication and the introduction of roach (Rutilus rutilus L.), and (b) the decline of the wider European eel stock across its distribution range. The findings from this study have relevance for the wider management of the European eel stock.